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В престижном журнала The Journal of the American Chemical Society (JACS) (IF 15,419) опубликована статья с участием сотрудников Института   д.х.н. И.Ю. Багрянской (внс, рук. группы ГРСА), к.х.н. И.К. Шундриной (снс, ЛМР, рук. группы ГТ) и к.х.н. М.C. Казанцева (завлаб ЛОЭ):

Platform for High-Spin Molecules: A Verdazyl-Nitronyl Nitroxide Triradical with Quartet Ground State


Получен и структурно охарактеризован гетероспиновый квартетный трирадикал, содержащий оксовердазил и два нитронилнитроксильных фрагмента. Трирадикал устойчив на воздухе и обладает высокой термической стабильностью в инертной атмосфере. Данные магнитных измерений указывают на достаточно сильные внутримолекулярные обменные ферромагнитные взаимодействия между парамагнитными центрами. Полученный гетероспиновый трирадикал с квартетным основным состоянием может служить платформой для получения дендримерных высокоспиновых систем.

 2021_jacs_TretyakovEV.gif

Abstract

Thermally resistant air-stable organic triradicals with a quartet ground state and a large energy gap between spin states are still unique compounds. In this work, we succeeded to design and prepare the first highly stable triradical, consisting of oxoverdazyl and nitronyl nitroxide radical fragments, with a quartet ground state. The triradical and its diradical precursor were synthesized via a palladium-catalyzed cross-coupling reaction of diiodoverdazyl with nitronyl nitroxide-2-ide gold(I) complex. Both paramagnetic compounds were fully characterized by single-crystal X-ray diffraction analysis, superconducting quantum interference device magnetometry, EPR spectroscopy in various matrices, and cyclic voltammetry. In the diradical, the verdazyl and nitronyl nitroxide centers demonstrated full reversibility of redox process, while for the triradical, the electrochemical reduction and oxidation proceed at practically the same redox potentials, but become quasi-reversible. A series of high-level CASSCF/NEVPT2 calculations was performed to predict inter- and intramolecular exchange interactions in crystals of di- and triradicals and to establish their magnetic motifs. Based on the predicted magnetic motifs, the temperature dependences of the magnetic susceptibility were analyzed, and the singlet–triplet (135 ± 10 cm–1) and doublet-quartet (17 ± 2 and 152 ± 19 cm–1) splitting was found to be moderate. Unique high stability of synthesized verdazyl-nitronylnitroxide triradical opens new perspectives for further functionalization and design of high-spin systems with four or more spins.



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В журнале Pharmaceuticals (IF 5,863) опубликована статья с участием сотрудников Института   к.х.н. К.С.Ковалевой, д.х.н. О.И.  Яровой, к.х.н. К.Ю. Пономарева, м.н.с. Е.С. Можайцева, к.х.н. Е.В. Суслова  и д.х.н., проф., чл.-корр. РАН Н.Ф. Салахутдинова

Design, Synthesis, and Molecular Docking Study of New Tyrosyl-DNA Phosphodiesterase 1 (TDP1) Inhibitors Combining Resin Acids and Adamantane Moieties

 2021_pharmaceuticals-14-00422-ag.jpg

Abstract

In this paper, a series of novel abietyl and dehydroabietyl ureas, thioureas, amides, and thioamides bearing adamantane moieties were designed, synthesized, and evaluated for their inhibitory activities against tyrosil-DNA-phosphodiesterase 1 (TDP1). The synthesized compounds were able to inhibit TDP1 at micromolar concentrations (0.19–2.3 µM) and demonstrated low cytotoxicity in the T98G glioma cell line. The effect of the terpene fragment, the linker structure, and the adamantane residue on the biological properties of the new compounds was investigated. Based on molecular docking results, we suppose that adamantane derivatives of resin acids bind to the TDP1 covalent intermediate, forming a hydrogen bond with Ser463 and hydrophobic contacts with the Phe259 and Trp590 residues and the oligonucleotide fragment of the substrate. View Full-Text


Keywords: 
tyrosil-DNA-phosphodiesterase 1adamantaneresin acidTDP1

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Cтатья  сотрудников Института: к.х.н. А.А. Сониной (нс, ЛОЭ), к.х.н. К.С. Мельниковой-Беккер (снс, ЛОЭ), А.Д. Куимова (мнс, ЛОЭ),  к.х.н. И.К. Шундриной (снс, ЛЭАСМ)  и к.х.н.М.С. Казанцева (завлаб ЛОЭ) размещена на обложке престижного  журнала CrystEngComm  (IF=3.117).


Alkyl-substituted bis(4-((9H-fluoren-9-ylidene)methyl)phenyl)thiophenes: weakening of intermolecular interactions and additive-assisted crystallization

Alina A. Sonina, Christina S. Becker, Anatoly D. Kuimov, Inna K. Shundrina, Vladislav Yu. Komarov and Maxim S. Kazantsev

CrystEngComm, 2021,V. 23, N 14, Pp 2654-2664l

 


 https://doi.org/10.1039/D0CE01794A

CrystComEng - frontpage

 2021_05_25_ACGA.jpg

Abstract

Aggregation-induced emission (AIE) materials find their applications in organic optoelectronics, bio-imaging and sensors. In this work, we introduced alkyl substituents in AIE-active bis(4-((9H-fluoren-9-ylidene)methyl)phenyl)thiophene and elucidated their effect on the molecular and crystal structures, crystallization and optical properties of materials. Ethyl-containing (C2-BFMPT) and octyl-containing (C8-BFMPT) 2,5-bis(4-((2,7-dialkyl-9H-fluoren-9-ylidene)methyl)phenyl)thiophenes were synthesized in 4 steps. The introduction of alkyl groups weakened intermolecular interactions, decreased the crystal quality, melting point, and density, and increased the solubility of materials. Octyl-containing derivative was demonstrated to generate two crystal forms obtained by the native (form I) and additive-assisted (form II) crystallizations. The latter appeared to have a better crystal quality. C–H⋯π interactions and an extensive positional disorder were revealed for both derivatives. In C8-BFMPT crystals (form II) only a half of molecular backbones were well localized due to multiple intermolecular C–H⋯π interactions, whereas another half demonstrated a high positional disorder. The AIE effect with a negligible photoluminescence (PL) quantum yield (QY) in solution and a PL QY of 5% for C2-BFMPT and 2% for C8-BFMPT (form II) crystals was demonstrated. The cooling of the C8-BFMPT form II resulted in 10-fold increase of PL QY. The introduction of alkyl-substituents and additive-assisted crystallization are highlighted as powerful tools for the control of crystal packing, morphology, polymorphism and the optical performance of AIE-materials..

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В журнале Applied Catalysis A: General   (IF=5.006) опубликована статья  с участием сотрудников Института: к.х.н. И.В. Ильиной (снс, ЛФАВ), Н.С. Ли-Жуланова (нс, ЛНТПС), к.х.н. Д.В. Корчагиной (снс, ГЯМР), к.х.н. О.В. Ардашова (снс, ЛФАВ), д.х.н., проф. РАН К.П. Волчо (гнс, ЛФАВ) и  чл.-корр. РАН, д.х.н., проф.  Н. Ф. Салахутдинова (рук. отдела ОМХ, завлаб ЛФАВ)


Catalytic synthesis of terpenoid-derived hexahydro-2H-chromenes with analgesic activity over halloysite nanotubes

A.Yu.Sidorenko, Yu.M.Kurban, I.V.Il'ina, N.S.Li-Zhulanov, D.V.Korchagina, O.V.Ardashov, J.Wärnå, K.P.Volcho, N.F.Salakhutdinov, D.Yu.Murzin, V.E.Agabekov

Applied Catalysis A: General

Volume 618, 25 May 2021, 118144


 https://doi.org/10.1016/j.apcata.2021.118144

 2021_05_25_ACGA.jpg

Abstract

Condensation of α-pinene derived p-menta-1,8-diene-5,6-diol (diol) with decanal was studied for the first time over modified halloysite nanotubes (HNT). The yield of the desired hexahydro-2H-chromene-4,8-diol with analgesic activity was 76–80 % practically not depending on the catalyst type, while selectivity to 4S-isomer decreased, and to 4R-isomer increased with increasing acidity. The highest selectivity to 4S-diastereomer (48.1 %) on halloysite is a result of weak acidity of this catalyst. DFT optimization of the key intermediate structure shows that the nucleophile attack proceeds at the equatorial position with the 4S-diastereomer formation, which was preferred on halloysite. On strong Brønsted (Amberlyst-15) and Lewis (scandium triflate) acids the target product yield did not exceed 37 % because of dehydration. Halloysite nanocatalysts displayed a stable performance. In the case of diol reaction with a set of carbonyl compounds, the yields of hexahydro-2H-chromene-4,8-diols (up to 88.0%) and the ratio of its 4S/4R isomers (up to 21.0) were significantly higher than on other catalysts.

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На сайте журнала Bioorganic Chemistry (IF 4,567) опубликована статья с участием сотрудников Института   к.т.н. С.А. Попова (снс, ЛМХ ) и д.х.н., проф. Э.Э. Шульц (завлаб ЛМХ):

Design and Linkage Optimization of Ursane-Thalidomide-Based PROTACs and Identification of Their Targeted-Degradation Properties to MDM2 Protein

 

Abstract

Ursolic acid (UA) is an accessible triterpenoid, widely applied in the design and synthesis of antitumor compounds. However, the mechanism of its anti-tumor effect is still unclear. To verify the molecular mechanism of its biological activity, based on the bifunctional activity of ubiquitination and subsequent proteasomal degradation of the target protein of the proteolysis-targeting chimeras (PROTACs) strategy, here we report the design, synthesis and cellular activity of six UA PROTAC hydrochloride compounds 1A-1F, in which UA acts as the binding ligand of the PROTAC and is linked to thalidomide (E3 ligand) through a series of synthetic linkers. The results revealed that compound 1B, connected with a POE-3 (3-Polyoxyether) possessed remarkable in vitro antitumor activity (with the IC50 value of 0.23∼0.39 μM against A549, Huh7, HepG2). WB results demonstrated that the administration of compound 1B induced significant degradation of MDM2 (only 25% to that of SM1), and promoted the expression of P21 and PUMA proteins, and thus inhibited the proliferation (77.67% of 1B vs 60.37% of CON in G1 phase) and promoted the apoptosis (26.74% of 1B vs 3.35% of CON) of A549 cells. This work demonstrated proof of designing the efficient target protein degradation by UA PROTACs with the POE linkers. In addition, we confirmed that UA possess the characteristic of targeted-binding the protein of murine double minute-2 protein (MDM2). This will lay a foundation for the comprehensive utilization of forest natural compound UA.

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В журнале  Успехи химии/Russian Chemical Reviews  (IF 6.926) опубликован обзор сотрудников Института

д.х.н. О.И. Яровой и чл.-корр. РАН, д.х.н. Н.Ф. Салахутдинова

Моно- и сесквитерпены в качестве стартовой платформы для создания противовирусных средств

О.И. Яровая, Н.Ф. Салахутдинов

Успехи химии, 2021, Том 90, Номер 4, Страницы 488-510

Mono- and sesquiterpenes as a starting platform for the development of antiviral drugs

O I Yarovaya, N F Salakhutdinov

Russian Chemical Reviews, 2020, Volume 90, Number 4, Pages 488-510

 https://doi.org/10.1070/RCR4969

rc4923c.gif

 

Анотация

Обзор посвящен низкомолекулярным растительным метаболитам моно- и сесквитерпенового рядов, которые проявляют противовирусную активность. Представлены сведения о противовирусном действии как эфирных масел и экстрактов растений, так и их компонентов. Приведены структуры биологически активных природных моно- и сесквитерпеноидов, а также синтезированных на их основе производных, обладающих выраженным противовирусным действием. Особое внимание уделено описанию мишеней противовирусной терапии. Рассмотрены механизмы действия противовирусных агентов, полученных из природных соединений.
Библиография — 163 ссылки..

Abstract

The review addresses the antiviral properties of low-molecular-weight plant metabolites, mono- and sesquiterpenes exhibiting antiviral activities. Data on the antiviral action of both essential oils and plant extracts and their components are presented. Structures of biologically active natural mono- and sesquiterpenoids and derivatives synthesized from these compounds and possessing antiviral activities are given. Primary attention is paid to the description of the targets for antiviral therapy. The mechanisms of action of antiviral agents obtained from natural compounds are considered.
Bibliography — 163 references.

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В журнале Inorganic Chemistry (IF 4,825) опубликована статья с участием сотрудников Института   снс(к.х.н.) А.В.Шернюкова, снс Г.Е.  Сальникова, мнс Д.А. Рудакова и снс(к.х.н.) А.М. Генаева

The Key Role of Anionic Bromine Clusters Facilitating Br Atom Insertion into the B-H σ-Bond

Andrey V. Shernyukov, George E. Salnikov, Dmitry A. Rudakov, and Alexander M. Genaev*

Inorg. Chem. 2021, 60, 5, 3106–3116
Publication Date:February 17, 2021
 
https://doi.org/10.1021/acs.inorgchem.0c03392



 C9DT043251

Abstract

The mechanism of the noncatalytic bromination of carboranes was studied experimentally and theoretically. We found that the reactions of o- and m-carboranes 1 and 2 with elemental bromine are first order in the substrate but unusually high (approximately fifth) order in bromine. The calculated energy barriers of these reactions decrease sharply as more bromine molecules are added to the quantum-chemical system. A considerable primary deuterium kinetic isotope effect for the bromination of 2 indicates that the rate-limiting stage is B–H bond breakage. According to quantum-chemical reaction path calculations, the bond breakage proceeds after the intrusion of a bromine atom into the B–H σ-bond. The 9-Br and 9-OH substituents in carborane 1 strongly retard the bromination of the corresponding derivatives. The bromination mechanism of 9-OH-1 is complex and includes neutral, deprotonated, and protonated forms of the carborane. The high experimental kinetic reaction order in bromine, together with quantum chemical modeling, points to a specific mechanism of bromination facilitated by anionic bromine clusters which significantly stabilize the transition state.

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В журнале Polymers   (IF=3,426) опубликована статья с участием  д.х.н. И.И. Олейника и к.х.н. И.В. Олейник

 Post-functionalization of narrowly dispersed PE waxes generated using tuned N,N,N'-cobalt ethylene polymerization catalysts substituted with ortho-cycloalkyl groups

Hongyi Suo, Irina V.Oleynik, Ivan I.Oleynik, Gregory A.Solan, Yanping Ma, Tongling Liang, Wen-Hua Sun

Polymer, Volume 213, 20 January 2021, 123294



https://doi.org/10.1016/j.polymer.2020.123294

2020_07_03_Polymers

 

Abstract

Six structurally related bis(arylimino)trihydroquinolyl-cobalt (II) chloride complexes [2-(ArNdouble bondCCH3)-8-(ArN)-5,6,7-C9H8N]CoCl2 (Ar = 2-(C5H9)-6-MeC6H3 Co1, 2-(C6H11)-6-MeC6H3 Co2, 2-(C8H15)-6-MeC6H3 Co3, 2-(C5H9)-4,6-Me2C6H2 Co4, 2-(C6H11)-4,6-Me2C6H2 Co5, 2-(C8H15)-4,6-Me2C6H2 Co6), distinguishable by the ring size of the ortho-cycloalkyl substituent and type of para-R group, have been synthesized and characterized. A distorted square pyramidal geometry is a feature of the molecular structure of Co4 with the two ortho-cyclopentyl groups located on neighboring N-aryl groups trans-configured. Compounds Co1 – Co6, on activation with methylaluminoxane (MAO) or modified MAO (MMAO), proved highly productive catalysts for ethylene polymerization at 60 °C [up to 17.1 × 106 g (PE) mol−1(Co) h−1 for cyclopentyl-containing Co4/MAO]; even at 90 °C significant activity was attainable (up to 6.75 × 106 g (PE) mol−1(Co) h−1). Strictly linear polyethylene waxes of low molecular weight (ca. 1.50 kg mol−1), narrow dispersity (Mw/Mn range: 1.1–2.4) and incorporating high levels of vinyl end-groups were generated. Post-functionalization of these PE waxes by epoxidation, thiol-ene addition and cross-olefin metathesis to form e-PE, PE-S-CH2CH2NH2·HCl and PE-MMA, respectively, has been demonstrated. For comparative purposes, [2-(ArNdouble bondCCH3)-8-ArN-5,6,7-C9H8N]CoCl2 (Ar = 2,4,6-Me3C6H2 Coo-Me, 2-(Ph2CH)-4,6-Me2C6H2 Coo-CHPh2) have also been prepared and evaluated as polymerization catalysts.

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В журналу Organic & Biomolecular Chemistry (IF 3,412) опубликована статья с участием сотрудников Института  снс(к.х.н.) А.М. Генаева и снс Г.Е.  Сальникова


Unusual temperature-sensitive protonation behaviour of 4-(dimethylamino)pyridine

Alexander M. Genaev, George E. Salnikov and Konstantin Yu. Koltunov

Org. Biomol. Chem., 2021,19, 866-872

This article is part of the themed collection: Mechanistic, computational & physical organic chemistry in OBC

 
https://doi.org/10.1039/D0OB01893G



 C9DT043251

Abstract

Stimuli-responsive and, in particular, temperature-responsive smart materials have recently gained much attention in a variety of applications. On the other hand, 4-(dimethylamino)pyridine (DMAP) and related structures are widely used as nucleophilic catalysts and also as specific parts of rationally designed molecules, where reversible reactions of the pyridinic nitrogen with electrophiles are involved. In our study, we have found an unexpectedly significant impact of temperature on the protonation degree of DMAP derivatives, especially in the case of protonation of the 4-(dimethylamino)-1-(2,3,5,6-tetrafluoropyridin-4-yl)pyridinium cation, derived from the reaction of DMAP with pentafluoropyridine. Thus, when dissolved in the TfOH-SO2ClF-CD2Cl2 acid system at 30 °C, this cation underwent a slight (<7%) protonation on the dimethylamino group, while the temperature decrease to −70 °C resulted in its complete protonation. Notably, such a scale of this phenomenon has never been observed before for other weak nucleophiles, being many times lower at the same change of temperature. The mechanistic aspects of these intriguing results are discussed.

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В журнале Chemistry - A European Journal   (IF=4,857) опубликована статья  с участием сотрудников Института к.х.н.  О. Рогожниковой, к.х.н. Д. Трухина, к.х.н. В.М. Тормышева, д.ф.-м.н., проф. Е.Г.  Багрянской

 


In situ labeling and distance measurements of membrane proteins in E coli using Finland and OX063 trityl labels

Benesh Joseph, Sophie Ketter, Aathira Gopinath, Olga Rogozhnikova, Dmitrii Trukhin, Victor M. Tormyshev, Elena G. Bagryanskaya



Chemistry - A European Journal, 
First published 16 Novemberr 2020 

Volume27, Issue7 , February 1, 2021, Pages 2299-2304



 https://doi.org/10.1002/chem.202004606


Abstract

In situ investigation of membrane proteins is a challenging task. Previously we demonstrated that nitroxide labels combined with pulsed ESR spectroscopy is a promising tool for this purpose. However, the nitroxide labels suffer from poor stability, high background labeling, and low sensitivity. Here we show that Finland (FTAM) and OX063 based labels enable labeling of the cobalamin transporter BtuB and BamA, the central component of the β‐barrel assembly machinery (BAM) complex, in E coli. Compared to the methanethiosulfonate spin label (MTSL), trityl labels eliminated the background signals and enabled specific in situ labeling of the proteins with high efficiency. The OX063 labels show a long phase memory time (TM) of ~5 μs. All the trityls enabled distance measurements between BtuB and an orthogonally labeled substrate with high selectivity and sensitivity down to a few μM concentration. Our data corroborate the BtuB and BamA conformations in the cellular environment of E. coli.

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В журнале Dalton Transactions (IF 4,052) опубликована статья с участием сотрудника Института   д.х.н. Е.В. Третьякова:

A black-box approach to the construction of metal-radical multispin systems and analysis of their magnetic properties

 C9DT043251

Abstract

An interaction of M(hfac)2 (M = Mn or Ni) with N-(bis(4,4,5,5-tetramethyl-3-oxido-1-oxyl-4,5-dihydro-1H-imidazol-2-yl)methylene)-2-methyl-propan-2-amine oxide (a nitronyl nitroxide diradical with the >C[double bond, length as m-dash]N(O)–tert-Bu coupler) was investigated under various conditions. It was found that prolongation of reaction time caused transformation of the initial diradical into new diradicals with the unique >C[double bond, length as m-dash]N–OH coupling unit and formation of binuclear Mn(II) and Ni(II) complexes, which were characterized by X-ray diffraction analysis. The resulting binuclear heterospin complexes have a complicated magnetic structure with six paramagnetic centers and a number of exchange interaction channels between them, as well as between neighboring complexes. To adequately describe the magnetic properties of these complexes, high-level ab initio calculations of their electronic structure and parameters of the spin-Hamiltonian were carried out. The accuracy of the conventional broken-symmetry density functional theory approach in the calculation of the exchange interaction parameters was also verified.

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В журнале Pharmaceuticals (IF 4,286) опубликована статья с участием сотрудников Института   к.х.н. С.О.Куранова, д.х.н. О.А.  Лузиной, д.б.н. М.В. Хвостова, к.б.н. Д.С. Баева, Д.А. Кузнецовой, д.м.н. Н.А. Жуковой, Д.б.н., проф.Т.Г. Толстиковой и д.х.н., проф., чл.-корр. РАН Н.Ф. Салахутдинова

Bornyl Derivatives of p-(Benzyloxy)Phenylpropionic Acid: In Vivo Evaluation of Antidiabetic Activity

 C9DT043251

Abstract

A series of bornyl derivatives of p-(benzyloxy)phenylpropionic acid were prepared, and their hypoglycemic activities were examined by an oral glucose tolerance test in mice. The results of this test revealed two compounds, 1 and 3, that can reduce the blood level of glucose similarly to reference compound vildagliptin. Both compounds were tested in an experiment on mice with metabolic disorders: the C57BL/6Ay strain. Along with hypoglycemic properties, the two compounds showed different abilities to correct lipid metabolism disorders. In silico prediction revealed that the studied substances are most likely bifunctional multitarget hypoglycemic compounds whose mechanism of action is based on a pronounced reduction in insulin resistance and a strong incretin-mimetic effect. The difference in the size of effects of these compounds on biochemical parameters of blood in the experiment on C57BL/6Ay mice was in good agreement with the computational prediction of the priority ranking of biological targets for these compounds. These results indicate that bornyl derivatives of p-(benzyloxy)phenylpropionic acid have a good potential as new agents for diabetes mellitus treatment due to their hypoglycemic and lipid-normalizing properties. View Full-Text

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